I just don't know if must be 0-5v or maybe from 2 to 3v square wave-.
Lol, well, it just has to get to the voltage which will be interpreted as high from your PLL-Chip (4046). The exact value, you can get from a datasheet.
E.g. if you let the 4046 run on 12volts, then you best put out 0/12V signals from your pickup-OpAmp. Sure the OpAmp is not able to put out a 12V signal if feed with 12V, but e.g. 10V would surely still be OK.
About the resistors. I think 20mA at 12V is a bit much. That much current is IMHO not needed. E.g. Stan used two 10kOhm resistors, which is about the size I would have taken too. I would have gone a bit smaller, not to be influenced too much by induced currents (noise).
You also have to remember, that if there's a resonance in the VIC, the voltage of the pickup-coil will be much larger than 12volts.
And if you wanna use a current transformer, then the PLL gets a problem. For the current has 90° offset. Then you would have to take the first comparator of the PLL, instead of the 2nd. But the first has the problem, that it also locks on harmonics, as it doesn't use a flip-flop.
BTW: Just for informational purposes, he used a 1MOhm in series with a 100KOhm for the feedback. The feedback is responsible for the hysteresis.
It does looks, like he additionally added, a capacitor. IMHO I already thought this is strange before, as I designed additional filter capacitors to my Pickup-circuit. You just don't wanna have some high frequency noise on the pickup-voltage.