Wow, thanks for that info.
The waveform I get is channel A is on 4x as long as channel B.
At least it does alternate now though.
I still do not get anything happening at the cell though.
Right now I am so frustrated I think the only way to get the water to do anything is to drive two 40kv flyback transformers on and off and shock the water with it.
I'm sure that may cause an effect of some type

All the other things I have tried have failed, and I think the voltage just isn't enough.
What kind of transformer are you using - a step-up?
I used a primary of approx. 600 turns to a secondary of 3500 turns - no effect.
I also tried a primary of approx. 600T and secondary of 5500 turns - no effect.
I also tried with and without a diode on the secondary - no effect.
It's no wonder most people say this is all bunk - so far, it appears to be.
The average experimenter would have given up on all this decades ago.
If only we had Stan's devices to examine...